Maayan PDZBase Protein Interaction Network
A PDZBase protein domain interaction database dataset of 212 nodes and 244 edges, collected by A. Ma'ayan et al.. Each record contains directed: False, weighted: False. PDZ domain protein-protein interaction network from the PDZBase database.. Suitable for biological network analysis, domain interaction research.
Cite this dataset at
maayan-pdzbase.echo.directory
Analytics
Node size is centrality, colour is community. Hover a node for details; click one to isolate its community.
Computed over the full corpus.
Record
- Catalog key
maayan-pdzbase- Authors
- Beuming, Thijs; Skrabanek, Lucy; Niv, Masha Y.; Mukherjee, Piali; Weinstein, Harel
- Year
- 2005
- Source paper
- PDZBase: a protein–protein interaction database for PDZ-domains
- DOI / arXiv
- 10.1093/bioinformatics/bti098
- License
- CC BY-SA 2.0 Germany (as stated by KONECT) (LicenseRef-CC-BY-SA-2.0-DE)
- Records
- 212
- Nodes
- 212
- Edges
- 244
- Nodes are
- protein
- Edges are
- domain interaction
- Attributes
- nodes have no attributes; edges have no attributes
- Languages
- en
- Collected
- 2006 (2000s)
- Tasks
- From the graph: link prediction, community detection
Provenance
- Originally published at
- https://konect.cc/networks/maayan-pdzbase/ unverified
- Hosted copy
- Mirrored on echo.directory on 2026-10-02, 2.1 KB across 1 files. Checksums in MANIFEST.json.
Citations
PDZBase: a protein?Cprotein interaction database for PDZ-domains
T. Beuming, Lucy Skrabanek, M. Niv, P. Mukherjee, H. Weinstein
Journal Article · Bioinform. · 2005
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- Overview of the protein-protein interaction annotation extraction task of BioCreative II
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T. S. Keshava Prasad, K. Kandasamy et al. · Methods in molecular biology · 2009 · cited 309× - Mutation in SHOC2 promotes aberrant protein N-myristoylation and underlies Noonan-like syndrome with loose anagen hair
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Fei Zhu, P. Patumcharoenpol et al. · Journal of Biomedical Informatics · 2013 · cited 251× - Systems pharmacology in drug discovery and therapeutic insight for herbal medicines
Chao Huang, Chunli Zheng et al. · Briefings Bioinform. · 2014 · cited 206×
Citation data from Semantic Scholar, retrieved 2026-10-20.
How to cite
BibTeX
@misc{echo2026,
title = {ECHO: Exploratory Compendium of Humanity Online},
author = {Switzer, Braden and Zafarani, Reza},
year = {2026},
url = {https://echo.directory},
note = {Syracuse University}
}
@article{Beuming_2004,
title = {PDZBase: a protein–protein interaction database for PDZ-domains},
volume = {21},
issn = {1367-4803},
url = {http://dx.doi.org/10.1093/bioinformatics/bti098},
doi = {10.1093/bioinformatics/bti098},
number = {6},
journal = {Bioinformatics},
publisher = {Oxford University Press (OUP)},
author = {Beuming, Thijs and Skrabanek, Lucy and Niv, Masha Y. and Mukherjee, Piali and Weinstein, Harel},
year = {2004},
month = Oct,
pages = {827–828}
} APA
Switzer, B., & Zafarani, R. (2026). ECHO: Exploratory Compendium of Humanity Online [Data repository]. Syracuse University. https://echo.directory
Beuming, T., Skrabanek, L., Niv, M. Y., Mukherjee, P., & Weinstein, H. (2005). Maayan PDZBase Protein Interaction Network [Data set]. https://doi.org/10.1093/bioinformatics/bti098
MLA
Switzer, Braden, and Reza Zafarani. ECHO: Exploratory Compendium of Humanity Online. Syracuse University, 2026, echo.directory.
Beuming, Thijs, et al. Maayan PDZBase Protein Interaction Network. 2005, doi.org/10.1093/bioinformatics/bti098.